aseg.stats


# Title Segmentation Statistics 
# 
# generating_program mri_segstats
# cvs_version 7.1.0
# cmdline mri_segstats --seed 1234 --seg mri/aseg.mgz --sum stats/aseg.stats --pv mri/norm.mgz --empty --brainmask mri/brainmask.mgz --brain-vol-from-seg --excludeid 0 --excl-ctxgmwm --supratent --subcortgray --in mri/norm.mgz --in-intensity-name norm --in-intensity-units MR --etiv --surf-wm-vol --surf-ctx-vol --totalgray --euler --ctab /Applications/freesurfer/7.1.0/ASegStatsLUT.txt --subject afni_t2 
# sysname  Darwin
# hostname macpro.local
# machine  x86_64
# user     taeylee
# anatomy_type volume
# 
# SUBJECTS_DIR /Users/taeylee/desktop/subjects
# subjectname afni_t2
# BrainVolStatsFixed-NotNeeded because voxelvolume=1mm3
# Measure BrainSeg, BrainSegVol, Brain Segmentation Volume, 1038313.000000, mm^3
# Measure BrainSegNotVent, BrainSegVolNotVent, Brain Segmentation Volume Without Ventricles, 1013412.000000, mm^3
# Measure VentricleChoroidVol, VentricleChoroidVol, Volume of ventricles and choroid plexus, 20707.000000, mm^3
# Measure lhCortex, lhCortexVol, Left hemisphere cortical gray matter volume, 218504.194317, mm^3
# Measure rhCortex, rhCortexVol, Right hemisphere cortical gray matter volume, 217537.148103, mm^3
# Measure Cortex, CortexVol, Total cortical gray matter volume, 436041.342420, mm^3
# Measure lhCerebralWhiteMatter, lhCerebralWhiteMatterVol, Left hemisphere cerebral white matter volume, 200979.000000, mm^3
# Measure rhCerebralWhiteMatter, rhCerebralWhiteMatterVol, Right hemisphere cerebral white matter volume, 198637.000000, mm^3
# Measure CerebralWhiteMatter, CerebralWhiteMatterVol, Total cerebral white matter volume, 399616.000000, mm^3
# Measure SubCortGray, SubCortGrayVol, Subcortical gray matter volume, 51562.000000, mm^3
# Measure TotalGray, TotalGrayVol, Total gray matter volume, 593046.342420, mm^3
# Measure SupraTentorial, SupraTentorialVol, Supratentorial volume, 910971.000000, mm^3
# Measure SupraTentorialNotVent, SupraTentorialVolNotVent, Supratentorial volume, 886070.000000, mm^3
# Measure Mask, MaskVol, Mask Volume, 1529172.000000, mm^3
# Measure BrainSegVol-to-eTIV, BrainSegVol-to-eTIV, Ratio of BrainSegVol to eTIV, 0.691484, unitless
# Measure MaskVol-to-eTIV, MaskVol-to-eTIV, Ratio of MaskVol to eTIV, 1.018381, unitless
# Measure lhSurfaceHoles, lhSurfaceHoles, Number of defect holes in lh surfaces prior to fixing, 24, unitless
# Measure rhSurfaceHoles, rhSurfaceHoles, Number of defect holes in rh surfaces prior to fixing, 26, unitless
# Measure SurfaceHoles, SurfaceHoles, Total number of defect holes in surfaces prior to fixing, 50, unitless
# Measure EstimatedTotalIntraCranialVol, eTIV, Estimated Total Intracranial Volume, 1501571.972164, mm^3
# SegVolFile mri/aseg.mgz 
# SegVolFileTimeStamp  2020/07/16 16:36:14 
# ColorTable /Applications/freesurfer/7.1.0/ASegStatsLUT.txt 
# ColorTableTimeStamp 2020/05/12 01:34:25 
# InVolFile  mri/norm.mgz 
# InVolFileTimeStamp  2020/07/16 12:18:48 
# InVolFrame 0 
# PVVolFile  mri/norm.mgz 
# PVVolFileTimeStamp  2020/07/16 12:18:48 
# Excluding Cortical Gray and White Matter
# ExcludeSegId 0 2 3 41 42 
# VoxelVolume_mm3 1 
# TableCol  1 ColHeader Index 
# TableCol  1 FieldName Index 
# TableCol  1 Units     NA 
# TableCol  2 ColHeader SegId 
# TableCol  2 FieldName Segmentation Id
# TableCol  2 Units     NA
# TableCol  3 ColHeader NVoxels 
# TableCol  3 FieldName Number of Voxels
# TableCol  3 Units     unitless
# TableCol  4 ColHeader Volume_mm3
# TableCol  4 FieldName Volume
# TableCol  4 Units     mm^3
# TableCol  5 ColHeader StructName
# TableCol  5 FieldName Structure Name
# TableCol  5 Units     NA
# TableCol  6 ColHeader normMean 
# TableCol  6 FieldName Intensity normMean
# TableCol  6 Units     MR
# TableCol  7 ColHeader normStdDev
# TableCol  7 FieldName Itensity normStdDev
# TableCol  7 Units     MR
# TableCol  8 ColHeader normMin
# TableCol  8 FieldName Intensity normMin
# TableCol  8 Units     MR
# TableCol  9 ColHeader normMax
# TableCol  9 FieldName Intensity normMax
# TableCol  9 Units     MR
# TableCol 10 ColHeader normRange
# TableCol 10 FieldName Intensity normRange
# TableCol 10 Units     MR
# NRows 45 
# NTableCols 10 
# ColHeaders  Index SegId NVoxels Volume_mm3 StructName normMean normStdDev normMin normMax normRange  
  1   4      9971    10260.8  Left-Lateral-Ventricle            29.7125    11.7771     9.0000    80.0000    71.0000 
  2   5       163      211.1  Left-Inf-Lat-Vent                 49.3620    11.1609    18.0000    77.0000    59.0000 
  3   7     10530    11312.3  Left-Cerebellum-White-Matter      89.3004     6.6013    28.0000   109.0000    81.0000 
  4   8     52936    52654.4  Left-Cerebellum-Cortex            70.1416    10.6957    15.0000    99.0000    84.0000 
  5  10      7312     7056.6  Left-Thalamus                     82.6255     9.2861    39.0000   103.0000    64.0000 
  6  11      3275     3252.9  Left-Caudate                      76.6815     8.4754    34.0000    99.0000    65.0000 
  7  12      4480     4444.7  Left-Putamen                      84.3464     5.9073    52.0000   102.0000    50.0000 
  8  13      1534     1527.9  Left-Pallidum                     95.4589     4.4926    69.0000   120.0000    51.0000 
  9  14       985     1025.1  3rd-Ventricle                     35.8030    12.8513    13.0000    76.0000    63.0000 
 10  15      2082     2219.3  4th-Ventricle                     33.2440    11.0577     8.0000    71.0000    63.0000 
 11  16     17627    17369.1  Brain-Stem                        82.0423    10.6772    21.0000   109.0000    88.0000 
 12  17      3944     3826.0  Left-Hippocampus                  69.4341     7.6920    29.0000    95.0000    66.0000 
 13  18      1515     1463.7  Left-Amygdala                     73.9710     7.4599    42.0000    95.0000    53.0000 
 14  24      1127     1113.6  CSF                               44.2875    11.7413    16.0000    82.0000    66.0000 
 15  26       453      446.0  Left-Accumbens-area               72.9095     4.9976    49.0000    88.0000    39.0000 
 16  28      3573     3441.1  Left-VentralDC                    87.6325    10.3539    38.0000   114.0000    76.0000 
 17  30        17       32.3  Left-vessel                       56.4118     5.8743    44.0000    67.0000    23.0000 
 18  31       752      693.3  Left-choroid-plexus               47.8205    10.5267    19.0000    78.0000    59.0000 
 19  43      8874     8971.2  Right-Lateral-Ventricle           30.6520    12.4962     2.0000    92.0000    90.0000 
 20  44       183      235.9  Right-Inf-Lat-Vent                55.7377    12.2491    22.0000   103.0000    81.0000 
 21  46     11369    11711.2  Right-Cerebellum-White-Matter     88.5666     7.5417    34.0000   109.0000    75.0000 
 22  47     52507    52578.5  Right-Cerebellum-Cortex           72.6274    11.0136    15.0000   108.0000    93.0000 
 23  49      6689     6364.3  Right-Thalamus                    82.7834     9.7361    29.0000   102.0000    73.0000 
 24  50      3445     3377.9  Right-Caudate                     76.8035     7.9319    40.0000   103.0000    63.0000 
 25  51      4329     4374.2  Right-Putamen                     86.8616     6.3656    43.0000   103.0000    60.0000 
 26  52      1670     1651.1  Right-Pallidum                    98.2796     4.7631    60.0000   112.0000    52.0000 
 27  53      3654     3543.7  Right-Hippocampus                 70.7211     7.7353    22.0000   100.0000    78.0000 
 28  54      1585     1567.3  Right-Amygdala                    73.8808     6.9580    35.0000    95.0000    60.0000 
 29  58       482      452.0  Right-Accumbens-area              75.1805     5.6941    55.0000    95.0000    40.0000 
 30  60      3622     3400.3  Right-VentralDC                   88.7198    11.2893    29.0000   114.0000    85.0000 
 31  62         8       20.3  Right-vessel                      55.2500     8.3964    47.0000    71.0000    24.0000 
 32  63       764      750.2  Right-choroid-plexus              50.5458    10.0601    25.0000    76.0000    51.0000 
 33  72         0        0.0  5th-Ventricle                      0.0000     0.0000     0.0000     0.0000     0.0000 
 34  77       626      526.3  WM-hypointensities                69.2125    11.4939    43.0000   111.0000    68.0000 
 35  78         0        0.0  Left-WM-hypointensities            0.0000     0.0000     0.0000     0.0000     0.0000 
 36  79         0        0.0  Right-WM-hypointensities           0.0000     0.0000     0.0000     0.0000     0.0000 
 37  80         0        0.0  non-WM-hypointensities             0.0000     0.0000     0.0000     0.0000     0.0000 
 38  81         0        0.0  Left-non-WM-hypointensities        0.0000     0.0000     0.0000     0.0000     0.0000 
 39  82         0        0.0  Right-non-WM-hypointensities       0.0000     0.0000     0.0000     0.0000     0.0000 
 40  85        75       84.8  Optic-Chiasm                      67.1733    15.2061    22.0000    96.0000    74.0000 
 41 251      1001      922.3  CC_Posterior                      93.6434    15.0514    26.0000   116.0000    90.0000 
 42 252       651      557.0  CC_Mid_Posterior                  85.3564    19.2853    30.0000   113.0000    83.0000 
 43 253       512      463.9  CC_Central                        92.4980    16.5128    36.0000   114.0000    78.0000 
 44 254       624      588.6  CC_Mid_Anterior                   93.5176    13.9148    42.0000   116.0000    74.0000 
 45 255       856      846.8  CC_Anterior                       96.1647    10.8274    41.0000   112.0000    71.0000